Scaffold Ga0098040_1000266

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1000266
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24828
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033600	Metagenome / Metatranscriptome	177	Y
F035326	Metagenome / Metatranscriptome	172	Y
F072246	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_100026613	F072246	N/A	MTNNSTENTPVTSDYSRLARWLCLFEAVNIIAEKAEKIEHTTDCLKPIPINKYINERYHSVLKDVEYELSNNHHTHRR*
Ga0098040_100026615	F033600	N/A	MMKGILFEDLYKYTNKYWKDVKSRHVRPTTKTLADIAKASPDTYNQVKANLVPFPGDHLIEQLGAAYKSISDANALISQLFENPSVHLDEKNVKSATLKLQKIQDLIKSVSEDLDHDETDN*
Ga0098040_100026624	F035326	N/A	MKNKVTTCGYFIKRLRDNGYTVNRIFSEYTTEDPRRWTVMLNPQTNALYITCYVNYDWTEDFKFELNDGSRFKNFQLKTDSMEVIMTKLIEKDIMPNEKDNS*