Scaffold Ga0098058_1032648

Overview

Basic Information

• Taxon OID: 3300006750
• Scaffold ID: Ga0098058_1032648
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1506
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F006818	Metagenome	364	Y
F010572	Metagenome	302	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098058_10326481	F004336	N/A	VILRYKFRGDKMKFIRNMLFTTGRYPSTMGAGGQQDVDFCRYIEWMWFKRCMWLLGVSLAFGGIGLYVGYFYDDVVVEYGMMIWGVAWLYNGFLLFVMAISMILAMLKALVVKAFVSPEVQVGQAATRTAQMMRKGGL*
Ga0098058_10326483	F006818	GGA	MVTYSRKPQSQVEAEPEREVAPAPNILHRQPVAQRMMPTAEQMSDEELDLYVKRLTMRHKRLSRKWMGLRRKHGKDECPYCGMNTGGGFCKIHQRDYDEYLGALSTRQNRSFGL*
Ga0098058_10326485	F010572	AGGTGG	MTGYSGSPSGYMNPVAVDKIQHPDYDAKAAENITMRVCQYLYPIIKNSVEMLEVLCKETDVQVPTDLADNMEFL