NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098042_1000702

Scaffold Ga0098042_1000702


Overview

Basic Information
Taxon OID3300006749 Open in IMG/M
Scaffold IDGa0098042_1000702 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12981
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (59.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000497Metagenome1075Y
F016666Metagenome / Metatranscriptome245Y
F025768Metagenome / Metatranscriptome200Y
F054920Metagenome139N
F087273Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0098042_100070212F025768AGAAGGMLDLLKKLLGIDKLEYKIRLLERKNYWREKYRDR*
Ga0098042_100070217F087273N/AMKKTREDVTKEILDVDFDDTTKSKVFDDDGYEEGKSKDREMTANASVSDNFKGGLLYKGKAKDYPGAKKLLEKKKAKVIQLKPKNK*
Ga0098042_100070219F016666GGAGGMSNPFKRTGKQPRLGVKSFSVEDVKAADKRFYDKFPGAVEDAAMLKKAMQNPGDEVVKIDDERKAQHAKMMRGIKIEVETF*
Ga0098042_100070224F000497N/AMKNKNDKIIENKVALSFREYENKKVLFRLFNTKREKSKSFNIYEKAKFSSTIKDAFNSDYRKVDIEYDTTKNNRFKKVNLLIDLNSYLDVNKKNLYLDLLNSNKEFIKKNKVDNSIIENIKFFEKRINDLK*
Ga0098042_100070232F054920N/AFYTCDDDDLDKEYGMYYGNLEFDPLDIMESHSGHTKMFHKENGEWRQL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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