NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098042_1000566

Scaffold Ga0098042_1000566


Overview

Basic Information
Taxon OID3300006749 Open in IMG/M
Scaffold IDGa0098042_1000566 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14401
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (100.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010318Metagenome / Metatranscriptome305Y
F010532Metagenome302N
F010571Metagenome302Y
F028971Metagenome / Metatranscriptome190Y
F031261Metagenome183Y
F038195Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0098042_100056611F003976AGGAGGMGKVRDAYYEEKLDILDTLEKLDMSVRLLNVWVNEPMGFENAKYLLEKNANQKFDWFSRDMVKELVEEETYG*
Ga0098042_100056613F031261AGGAGGMNRTKTYVMTVDKNSSNVLEQLNKLQQVRQSVSLLNKHSTKKHYVKCQGRWGYNNPDYNQRTIPFCPLDKAVKWDVYIYAR*
Ga0098042_100056614F010318GAGGMNVDSDKPRYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSGQYEGDQGETDWKWSAQENILTEGWSLVEGLN*
Ga0098042_100056616F010532GAGGMNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYDDIRTWDEPMNVSEVDIIHRIEEHMSYMVSSYLTKPYEGIGMDEQALRQA*
Ga0098042_100056621F028971GGAGMVDEIKDTELTPMTKAEYRAWEDYVIKYNEDNPKHPICYELTWDKDEYKVKLLDLKVDREGQE*
Ga0098042_10005668F038195AGGAGGMKLHKDFYEYKTIPFTYFAKIKNRHDFKREWVTVRCQEDIMKQQPQNVEIRRLKKNV*
Ga0098042_10005669F010571AGGAGGMSNIITETYADKLYEEQYEKHYQELSKTSDDVDWIENEAERLALIDLDNFEMEG*

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