Scaffold Ga0098035_1263307

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1263307
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 566
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001494	Metagenome	683	Y
F028834	Metagenome	190	Y
F034711	Metagenome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_12633071	F001494	N/A	KKGKTMQKTKTDPVKDFQKQAVEQRVCLFYVADRVKGILEDSKTEEQLRDNLEEFKDECVHNIGTNALIERYEY*
Ga0098035_12633072	F034711	AGG	MKLDKDIVKNKKKYSSFYTYDNAYGPGFGFRWKEIPAAQTNLVHKRVTSNKTWTKLVQGYSNLGITYKGHYTP*LKLI*
Ga0098035_12633073	F028834	AGGA	MIEIDIRSENSAYITIGKWVIYVDDSTGEQFIDSWEE*NTN