Scaffold Ga0098035_1200419

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1200419
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 666
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024648	Metagenome	205	Y
F062171	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_12004192	F062171	GAGG	VKIGDLVSYGTLPHWKLEGCLGILVRKLQWNDTWIEGINWDGDPAWWIQYVGDEAPTWNYEEELTLVTEGN*
Ga0098035_12004193	F024648	AGAAGG	MCEYHLYPGDMFRTKAGLGLIVKKSGGYFTYSTVGDDQQKAYQTIETKRFYGYCDDMSHGQILEVILLPNRKYRRKRK*