Scaffold Ga0098035_1118565

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1118565
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 913
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → uncultured Mediterranean phage uvDeep-CGR2-KM22-C255 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002768	Metagenome / Metatranscriptome	531	Y
F021181	Metagenome / Metatranscriptome	220	Y
F068133	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_11185652	F068133	AGGAGG	MQLAIDVFTDMMTSKEIYIIIGGCIIMWIALERMDR*
Ga0098035_11185653	F002768	AGGAG	MSKRSWWSLKIHDYPNYDPNDADLEHIAELVKKGYYQGELIQEDKEENATSN*
Ga0098035_11185654	F021181	AGGA	MRWLILIQLLAGFVLAFLGVIIMFHLYEVWLGLGITLVGFYAVIRAVHRSQNE*