 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006738 Open in IMG/M |
| Scaffold ID | Ga0098035_1000632 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17419 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -13.003 | Long. (o) | -80.809 | Alt. (m) | Depth (m) | 135 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028039 | Metagenome / Metatranscriptome | 193 | Y |
| F041493 | Metagenome / Metatranscriptome | 160 | Y |
| F042628 | Metagenome | 158 | Y |
| F086164 | Metagenome / Metatranscriptome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0098035_10006322 | F042628 | AGCAG | MGKYNKSNANNIFKEEPEISVSEHTVTKKGRRLKMVIPEGKIGYGDVESHAQIAGDLATKHSDDTKAGEKAYEQVREHRETHGGSTIEENQVDMAVQKIYSRMAVAKVFYIDDPVTGEPVAIETLFMKTEPSGIVRPLKYRYDIQTKKTTEVPI* |
| Ga0098035_10006323 | F086164 | GGAGG | MAFGHEKLTVDATVRSLTIPNDVNFAHIVVETGPIRLRIDGTDPATAVGVLVGAGDSFTVYGRDTLKGLNMVEATSTDAVINVAYGVASTGIHGVITNTAV* |
| Ga0098035_10006325 | F028039 | GAGG | MTLDLVAQKERWVTIVQGLKFESNWKEVLEKHLKDNNLKELPEPEWTDADPTMAYIYLPARSLKGDKVRMDKTRARMFPESIVGYLEKGGLMKLPEKVVASQSSQTKEQLPEMETEKPKREKIKLPKIGG* |
| Ga0098035_10006326 | F041493 | AGGAG | MTTQQDYYIKTIDNNEDHLYTIIFDSTSGDPLRVKTENLGYYLSKVKRESKLSGDRLIFTGEWIPSFVKAKEKIIGSPSSSVAKRVAPRSQVKAGKRRRGKRGKRK* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |