Scaffold Ga0098033_1036554

Overview

Basic Information

• Taxon OID: 3300006736
• Scaffold ID: Ga0098033_1036554
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1471
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004165	Metagenome	450	Y
F042624	Metagenome / Metatranscriptome	158	Y
F088744	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098033_10365541	F042624	N/A	MKKITRCALAIGIIFSSCQKEEELSSRNWCSPTFEEFDCNSPVMLGESGTVGFLEGQSDAQIVAKIRNVWNLSDDYVIWLDPETYTSKGGTGTAYNIDPEYLAFPLHISSMSDEWGWDYYEEYKQDKQAFLDKYTNGKETGGMKLCNLK*
Ga0098033_10365543	F004165	GGAG	MSKLNNKQKSKIRREVDLDLGVKAPRTIVFKSKKIYSRKIKHKKNE*
Ga0098033_10365544	F088744	N/A	MNREELKRLWFNIDYSNVKEKKEIIVEIDKNPHWPGYGTIEILREGPDGYSSFKTHQEFPMRYVFNCNEYKSGEYKLIIK*