Scaffold Ga0098033_1035794

Overview

Basic Information

• Taxon OID: 3300006736
• Scaffold ID: Ga0098033_1035794
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1489
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F016673	Metagenome	245	Y
F067830	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098033_10357942	F016410	N/A	MRKFSSKKEQLEWADKLLRKLSQRNTGGVTPIIKQMIIEEYIRRLKK*
Ga0098033_10357943	F010920	AGGAG	MSEIKKYDVLISYPIQVGAEDEEHVKEILMASPLLRDAADLTLKIVEVKDDKTKVNNS*
Ga0098033_10357944	F067830	GGAGG	MTKPKLTIVDELDGKVLAYRNKTSIELFHQTKEVGFNDFSYSWEEIIAVGKKLEDFLEKDLVNVT*
Ga0098033_10357945	F016673	N/A	VISESDTEDIVIKSYVELYLKALNESRSYKFIKIIKSRMFELIKRK