Scaffold Ga0098033_1024091

Overview

Basic Information

• Taxon OID: 3300006736
• Scaffold ID: Ga0098033_1024091
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1873
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003611	Metagenome	477	Y
F022669	Metagenome	213	Y
F087034	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098033_10240912	F022669	GGAGG	MIKTIQELKQINKKWFTPENKRFFQDINYRVLMGAKSKTRFLIQHTYQWSDMFDGIKKAVFVVKPITTDGKILPTVETLKELNQVKQYMKGV*
Ga0098033_10240913	F003611	GGA	MKELFYALYFALHFAGAFLGLIIAIHLSTFLGLSMFFFFIIKFCLMMPSIEKQI*
Ga0098033_10240916	F087034	N/A	MSKNEKRLESKILDLDCYDQELWVMDNQDIINNSSVKFKSFIKDLDFGTSQSALENLNADFYQQTMKMI*