Scaffold Ga0098033_1001125

Overview

Basic Information

• Taxon OID: 3300006736
• Scaffold ID: Ga0098033_1001125
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11265
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033590	Metagenome / Metatranscriptome	177	Y
F033600	Metagenome / Metatranscriptome	177	Y
F072246	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098033_100112510	F033600	N/A	MMKGLLFEDLYKYTNKYWKDVKSRHVRPTTKTLADIAKASPETYNQVKAELVPFPGDHLIEQLGSAFKSISDATGLITQLFENPSIHLDEKIVKSATLKLQKIQDLIKSVSEDLDHDETDS*
Ga0098033_100112511	F033590	N/A	MGKFENKFLSLLKEDEFGAATPDVAPAVDAEPGDDQQSFANALDEPEHAKDFEDVIDQNPNEQQELSDLQEWIGNIDEVLQYLNGGISSVLGKLRNDNKVGTIFADVSDATKSEILDVCERLASLNQIFKNLYIEKHK*
Ga0098033_10011258	F072246	N/A	MKNNSSADREIKQYSQLARWLCLYEAVNIISDKAEKMGHKGDCLKPIPINKYINERYHSVLKDVEYEFSNNLHTRHH*