Scaffold Ga0098033_1000288

Overview

Basic Information

• Taxon OID: 3300006736
• Scaffold ID: Ga0098033_1000288
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24617
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055656	Metagenome	138	Y
F081887	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098033_10002881	F055656	N/A	LMNTCIFGYFTYSFIQYRKREKCRTQELNHRVQYMLDEMERDYQASSIQEEKPVTNVFREHVIEEISKQRLIYDETTGRYIKLRQIK*
Ga0098033_10002885	F081887	N/A	MQIEKNTVCYTSEIGHNNFWYPSNNEVFIKEKCEVERLSWISGGSSIAIKILKSNLVPRTLSESTTKNTSPPTKNDYTIVWIERCSIS*