Basic Information | |
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Taxon OID | 3300006735 Open in IMG/M |
Scaffold ID | Ga0098038_1030551 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2011 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -12.999 | Long. (o) | -80.801 | Alt. (m) | Depth (m) | 30 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005266 | Metagenome / Metatranscriptome | 406 | Y |
F072253 | Metagenome | 121 | Y |
F077787 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0098038_10305511 | F072253 | AGGAGG | MPKKNDTWLIGMPKGPIGPFVWQVWVKGSQKPVRVVAFDIDHIKNQLGGKKVLKAIKEKEKKESFGNSVPLGPKGYKGSSRPADYDAGFKVLRQWIDSKGGPPEEIRKKLRELWIDYDKAPRKTK* |
Ga0098038_10305512 | F005266 | AGGAGG | MSVHIRYRFYKEKDHYLEDERMTRGYTLVEGDEPTPFHVVLKEFYKDMKNRAKVINIWRTKAGEANYRMEEEERRMSE* |
Ga0098038_10305513 | F077787 | AGGTGG | MSEKQFKVVLSFDVQKTIIVNAKDEDEAYDLAYAGEGEIDNVDYEFRDHIETEEV* |
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