Scaffold Ga0098038_1015861

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1015861
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2907
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064686	Metagenome / Metatranscriptome	128	Y
F090266	Metagenome	108	Y
F100991	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10158614	F090266	N/A	MKEIKIEGKDVVKGDWIYVECKDKDGEVYSEEGSVVFIDDEEVGMFDGKEGWSVKREEIVSVVPF*
Ga0098038_10158615	F100991	N/A	MEEKEFKKFVKDWVKKEWPDFREVHMEGAEDEWDEEGGKHMFKEVMCGFLSDMVVDVWAEL*
Ga0098038_10158616	F064686	N/A	MDIEFQITKEEYANMWDELKEGRVEESEWREFCDIVFKQQLEDNKDVMIRLKNR*