Scaffold Ga0098038_1002363

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1002363
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8048
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012581	Metagenome	279	N
F060436	Metagenome	133	N
F064207	Metagenome	129	Y
F070211	Metagenome	123	Y
F085807	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100236312	F064207	GGAGG	MTNKNRRIIMQIDKLTDREKLILDFLKDNNVDIEEVIDAIIKANGFVGVGLVRLQDIIIDAVKKHFKKESLDKIMNG*
Ga0098038_100236320	F012581	GAGG	MPKFTLYAKKVYYYRKEINARDRKTAEKRGDQYESERLFIPTGEEFYITSIEENEDD*
Ga0098038_100236324	F070211	AGGAGG	MYDPVVIQMLEKNVRELQEQLRNSYARIKQLNEENYKLRRALGIEKDNGEQVTNSSGGVWLGDAEMPDAEHLKDG*
Ga0098038_100236326	F085807	AGGAG	MSNLWDKDAKRMYRKLFKEYKREGCSNEEARRYAQNDCKNSIDLDIFSAEKVYKKTLKDFD*
Ga0098038_10023636	F060436	GAGG	MSRFNKINIEHFANLVQEISIKRYTQQEFIEIVEELYMSIFRHNTKGEYVIETMPYDKDNWKVYRPTQTKEEALLLIKGDKE*