Basic Information | |
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Taxon OID | 3300006734 Open in IMG/M |
Scaffold ID | Ga0098073_1001098 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8025 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (21.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Gulf of Mexico | |||||||
Coordinates | Lat. (o) | 28.867 | Long. (o) | -90.467 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F046328 | Metagenome / Metatranscriptome | 151 | N |
F101004 | Metagenome / Metatranscriptome | 102 | N |
F101005 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0098073_100109811 | F101005 | N/A | MYNRKDKEKELMEYHSGYLEKVNSSYQFTAKTAFYSKGKYGRQIQLFENELNKGSDIYIEFVDFERDSRGVETNMVPMFWERPLFKYRYNPYFKEEYEVKVSTNSRGEEYSAYIIPTSELVCVNKGSEEIPYNEYEKNRTTEPVEQKKLSVFPDFEEEFIPKLKDVESSDDVSTILLEIAAGFQKLAVALKNK* |
Ga0098073_100109813 | F046328 | N/A | MGLSTKDLVNENNGGGMAKTIAPGNHRLKINSIVLEDFQFIDGAKHLILNVETEPIEGFEGFLIDKDDESKGKYTGQIGRVKASQYAYADGQTKSGIKIQRDRSLMMFLANLSKATGIMKWFEEQDNKFNTIEDFVRNFSDNAPLKDKYLDFCIAGKEYENKSGYTAYDMWLPKAENNKYAYGEEGSERILKYDESKHLKKLEIKPVDNFGDDDDDFAPSKRSSSDFNLD* |
Ga0098073_10010988 | F101004 | N/A | MEDIFLKLIREHITPNSYYILYCVKNSIIPCSYVNKELEVKRLISDGWLNEDLTLTDKSIIFTTEIDGYFKKSKKKTSKTLLGDNFEDNVKKYSETFPSIKLASGKYARSNPKNLENAFRWFFETYDYSWDTVLLAVKKYVLEYREINYQYMRTSQYFIRKQSTDKTWDSDLADYCEMILNKPDDEVIFIKERLF* |
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