Scaffold Ga0098073_1000633

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1000633
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11394
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100063319	F005243	N/A	MSVKKINPELQDHDPQKEMTKEEMAARRAEITEFYKDNIPHLTIQAEYEALLCDIEESRAKRMQAQMFMAQQYANQNGQGVDPNSEEGKAFQEAMKKAMENETA*
Ga0098073_100063321	F004866	GAG	MALVNQVSLKHQVDINVSIKYQIVTYCFFNDILISNSDLKFLTELAKNKNIELTKFCTETVNNNIFKSAQSARNAITKAEKKGLLIKNGHNKKTIALNPEINVQSSGLVLLDYKILGSETKESQGV*
Ga0098073_100063322	F006666	N/A	VKPKSHKEFKDGIADEVGVHPQVVDDFITFYYGKLRKKLSSLAYPRINVDGLGTFYLRKNKLEKAILKNKSLLGNIAKRTYNGFAKSEDIQNNIIQMEAAMQQLEEDIKNKKEFRNGKK*