Scaffold Ga0098073_1000044

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1000044
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52162
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (44.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023326	Metagenome	210	Y
F056542	Metagenome / Metatranscriptome	137	Y
F070018	Metagenome / Metatranscriptome	123	Y
F097170	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100004445	F070018	GGA	MKTYGVVFADGTKELISIVLDDEGNPRMDTLAPYPTPEDWAEPTIIPLVKLPKPEEGEWKPVVVWFEDRVERQWEAA*
Ga0098073_100004446	F023326	N/A	MSSVNGREKYGMFFPAEIDDLGIELYCYALTRGRYGKWLQREKSIDLADYKLLTPFEHFIKAVQIQWPRDVSIKNRGYTNTQLLRTLEELCNNDDVVLAGAASMGKSFPVALWVLLDWCAAPFCTSSWVATTTIGASEDRIWGIIAKLWKLQRVRFGQLIDYRHMIVWDGAEGDDERDFQNAIKALAFEKGSAGQKAIDTTRGRKNQRVRMAMDELPEMEMGAITVRSNLASNNDKVFIGIGNPSVGDNPHTRWCLPKGATNFDGVNMDMERWETETGICLFYNGMKSPNFQAPENEPSPFPFLMDREKQADMLRLAYGDADSVDYMRNAIGWWPKSGFAQTILTADVIRNANTNEEPLWDSEGMVKVAGFDTAFTAGGDRCVLSVGKLGFVRGTKNKVLYLEKQHIIQISATASAEFEVQLAEKVVEICRNSGIAPHRFGMDVSGDGGRVGQAIIREWLKYDQSGHSIVLISSMGKPTDRIAAEVDKRPCSEVYDRLVSEFHYSLYHGFRSRVIFGVDYASELGRELCLRRYDIKNKKISIETKNDYKARVGSSPDLADSMAYLVELGRRFGLVFIGNDKVMPTNRFWAREEKPVEIVEEYSSDDWGED*
Ga0098073_100004457	F070018	GGA	MKTYGVIFQDGTKELVSIVLDENDEPRMDTLAPYPTPEDWVEPQIIPLVKLPKPAEGEWTPKVVWFSDRVERQWEAV*
Ga0098073_100004465	F097170	N/A	MPTEGSVFDGFNSIVAQDADTHPSYLPEFYVAESVNRTFRGGINRTRPAIRWLELYPGEEESPTIVDDIQNGNFQGSYPYRATNYETSDGLLLSVSGVIYFIRIVNNVGYCYEIPRDGTTFTTWNDPSLMHTWFVQAEDRVYIQNGYQAAIAWDGNINSPAKRLNPFLQQMPIGTLMEYAFGRVFVSDRFNQIYASDIIFGNGFTDTSNTENFTEITYWAEGGAFATPSTMGNITAMKVMPYIGGNLRGQGELVVLTENGAFSMDVGLPRSVWNSTQVQRISLLGRGCTSPYVALANSELWFRSHDGWAFYSNSQSEFGRYFSMRKLSREVNKWVGRDTPWLRQFASTMFFDNYLISTVAPETQRTDAPGLNRYHRGMVVLDLDNSSSPAPDANLSFRWNGVWSGVRPTQCLAAQINSDKRGFIWSFDQDAKNRLYEITTNNQDDYGPAGTSPIKSFFISGRYDFNRSGATNKFQRKKLTGGEMWMSEIPGTVGSQVEYRSDSYPCWSELKVPTEYGCNPCVPQVESCTPLRSGNRYKRYKFTTPNPQECNDIAGIPSVEGSEFQLKVNLEGTATVDRVRIMANIKDGAMNTVGDCPEDDEECSKFLCCQERYYDYSIT*
Ga0098073_100004467	F056542	N/A	MLKGTDPKLMSGGAPTRGKIQEGMGNKPNLGTKTATAYSAKPLPTVGKMMK*