Scaffold Ga0098070_105147

Overview

Basic Information

• Taxon OID: 3300006726
• Scaffold ID: Ga0098070_105147
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZ
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 830
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 148

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013818	Metagenome / Metatranscriptome	268	Y
F025847	Metagenome	200	Y
F034895	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098070_1051471	F034895	N/A	MITLLEQLRPEVIEALEKNRDKYDYPVTKLYNSLDNKHLYSELSVGEMRDLTLWADVDERTWDYVDWKYGIKLFVDTIDAKR*
Ga0098070_1051472	F013818	N/A	MGDSVKKYHEMKQDIVDKESLYLCSEIEKALERIISYDDGMLDDKLFTKIKKPAIKLLREWHL*
Ga0098070_1051473	F025847	N/A	MKRINRLFNNFAIAILFFLLGTYFTYYKIDQRLWNETTQKAWDIEARALNFPQKSCYNWQDIELIIFGEIQE*