Scaffold Ga0098070_103047

Overview

Basic Information

• Taxon OID: 3300006726
• Scaffold ID: Ga0098070_103047
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZ
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1480
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 148

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037762	Metagenome / Metatranscriptome	167	N
F101007	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098070_1030472	F037762	N/A	MSNWKNFERRVATRLRGKRIPITGRKGLDIDHPILDIECKYRKQLPAWLFKDAWRQANEGTGIPVIAVGEYNSSDIFTIISIDTLVKLLETEYNRCQ*
Ga0098070_1030473	F101007	GGAG	MSMIVRHPFRNFFSSPFDVDWNEAYKQSMIPEDGTIIVQREMVEKKYRVKHESDGTVKYIPITEEVVSESD*