Scaffold Ga0031682_1164952

Overview

Basic Information

• Taxon OID: 3300006695
• Scaffold ID: Ga0031682_1164952
• Source Dataset Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP324 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 645
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Ophiocordycipitaceae → Ophiocordyceps → Ophiocordyceps polyrhachis-furcata → Ophiocordyceps polyrhachis-furcata BCC 54312 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: East of Recife, Brazil, South Atlantic Ocean
• Coordinates
  • Lat. (^o): -9.13
  • Long. (^o): -30.19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013050	Metagenome / Metatranscriptome	275	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0031682_11649522	F013050	AGG	MSKGKQPRTRVKVPKLLLSEIKKVFIKVDKEIGLEAAII