Scaffold Ga0031661_1121493

Overview

Basic Information

• Taxon OID: 3300006692
• Scaffold ID: Ga0031661_1121493
• Source Dataset Name: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0101 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 905
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: North of Cape Verde, Atlantic Ocean
• Coordinates
  • Lat. (^o): 21.45
  • Long. (^o): -23.45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036196	Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0031661_11214931	F036196	N/A	VLSPWGTDHWRHDKKAFIAWCKEAIREDSKARRELYGFAALNFGDVDTDKDGFINQGQFDRYLESVAAIPRRFGLAPVSSVDRSARLANHTVIFDQIDAKDGPARGKLGLDQVLRWTIDHVAGKISQIPEGDVGLYHVEDYSEAEYVGFIERAVNKPGSYEHVSFYNFILNVFIEADTQCEGRVTYDQFGKLLSRAAKVPRHFGLAPADVDESVRKAMFKAMELKRDGVPQGFVTHRKFWEWTVEHTKMKIDLQKAGKGWRENH*