Scaffold Ga0031697_1083302

Overview

Basic Information

• Taxon OID: 3300006687
• Scaffold ID: Ga0031697_1083302
• Source Dataset Name: Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2254 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 644
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West of El Salvador, Pacific Ocean
• Coordinates
  • Lat. (^o): 10.09
  • Long. (^o): -99.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025479	Metatranscriptome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0031697_10833021	F025479	N/A	ATIRNMKVFVLLAAVCHFSHSAPQLLYGAYPYVHHAAAVVTGNSVPVAVGGYKAVAGDNGDLKGPVHEVPGLVPALAVHKQESDGAVSLSTGTGALVHTPVIGYYGKRSAEPQLLYSGLAHPYAAYPYAVPTVAVKPLTVNHEVVATGQAVPVAVGGYKAEAGDNGDLKGAVHEVPALFGAPALNKQENANGGALTVGTSAYLKTTISKREAEA