Scaffold Ga0101770_1120610

Overview

Basic Information

• Taxon OID: 3300006674
• Scaffold ID: Ga0101770_1120610
• Source Dataset Name: Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2068
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location

• Location Name: Fredrikstad, Norway
• Coordinates
  • Lat. (^o): 59.185359
  • Long. (^o): 10.970104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042861	Metagenome	157	N
F072261	Metagenome / Metatranscriptome	121	N
F085589	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101770_11206101	F085589	N/A	MVKKMDIDXIERLISEXIAELEDFGTDGNYHVLNAIDALTVALTELEELEFTTSVED*
Ga0101770_11206102	F072261	AGCAG	MVWYIISRNRNLHAGTWTKNKKRKVAAMMSNKQKACVRWLDGYPGFFEPAFYKKAYIQGIKAEAIAENEHVVTVSIYCTIWLENGCDINRWISYNLKSELSTVSLSLDEFYTLKPEHLITLVQQNYYPATAF*
Ga0101770_11206103	F042861	AGGAG	MLRDLGNGKAILEFEDWEXEARYHWADLEEFGDFKASYLILNIEGLTDDDTINEFEAVGYLTTPEDQIKKISLSVLIDWEATGWIPAKLGELKSGELSAFDIYRTVWDYYEFVELTK*