NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101770_1065912

Scaffold Ga0101770_1065912


Overview

Basic Information
Taxon OID3300006674 Open in IMG/M
Scaffold IDGa0101770_1065912 Open in IMG/M
Source Dataset NameAnaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNorwegian Sequencing Centre (NSC)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6243
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location
Location NameFredrikstad, Norway
CoordinatesLat. (o)59.185359Long. (o)10.970104Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088753Metagenome / Metatranscriptome109N
F105008Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0101770_10659122F088753GGTGGMTECGRILQELEMLKKTNDERLARRLSDWYGFVLSEQTAGRVGDLIRSVPVDFVSLPFNGKRVENLINKCIKTLVEMAEDGRIPFETTAYMAESLRTGRKFLLRHAGQLCSKKLGPVLPIILHKETMTDMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCLSSDCDTAKRALRNITKDFVRDRMASFPRVDLKKDFFYLESGYGFDENGIIFINKGRVYYRTNDGTHELPDADLDSREELFMQIARAVAKVIEYEVATEFEKEKFTREADDWVLEIR*
Ga0101770_10659125F105008N/AMTAIYDIAREEMMRNGDISLHTADGLFEAFSLIMQFKERVKFLPWYLLVLQETRKGRTGNFTTTVPFVWKKGDVFSVVRDILETLPQRCRTEEILGPVPVVSAPGCAVRDGYAHLSRAGMFDLLFPAHDIMFEIPCETGGTFRGLMCRSAAKAAVAAGMSAGIVSFSSEREWFGRAFFCDRENRDVFAELLRLDEEMLKIALLERGTEISSIFSKIFPDCDWLETCDAGTVLNLDGRRYLVGKTPEEALTQGFLSCIRSVRDRFSDDGYLDIIR*
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