Scaffold Ga0101770_1040780

Overview

Basic Information

• Taxon OID: 3300006674
• Scaffold ID: Ga0101770_1040780
• Source Dataset Name: Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4305
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location

• Location Name: Fredrikstad, Norway
• Coordinates
  • Lat. (^o): 59.185359
  • Long. (^o): 10.970104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101770_10407803	F047639	AGGAG	MRFLNKHKYLRVIKFNSDKSSTITYHLSSKFKPDFLINPDHIFLYNGYRTVIITDKSAETINPLDFNSKFNASDFKTAIESKLIKDTFSTLKPNLFDTTTIILILNLLMSFGILFLLLKGQGVL*
Ga0101770_10407804	F029085	AGGAG	MKDIKNDKLKIDELLEENISEQLENXSSDLVSLIAISELTNLEKLKVITRLKDEQVPLLTRLYMYAETFNVPFMKNLADNILQLQISIRGLGRKELVNIVRESTPTETKRGLFGTKDVFR