Scaffold Ga0101770_1024232

Overview

Basic Information

• Taxon OID: 3300006674
• Scaffold ID: Ga0101770_1024232
• Source Dataset Name: Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7424
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location

• Location Name: Fredrikstad, Norway
• Coordinates
  • Lat. (^o): 59.185359
  • Long. (^o): 10.970104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030054	Metagenome / Metatranscriptome	186	Y
F065696	Metagenome / Metatranscriptome	127	Y
F090436	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101770_102423211	F065696	N/A	MKKVIYILLILFLISCSKQQPIKHLAVREPSPLHYIDDLDTKLYIICSKYEALHLYDDLKGTLIQEIGITNYHKTAKHRMSIISHTNDIGTCQFQSATYDWLSTKYGINTNIIDPETSQITVMVXAFKDGRQNYWNGYKKYKNSIE*
Ga0101770_102423215	F030054	N/A	MNKREKKLFFVVLVLLAILLFNVESIKKKNQIINTNKKLISSYKERINSSNLAIDSLQNAIKLSKKVDTIIKYRYKQKIDSIYVYTHDDYISFYDTLLHTNIQKSDTFICFDSISIQKLSIKLLECGKDSELLANCYIQNNLYANIINIQDSVISLKDSVNASLEDMYKQKVKKLKRQRNTFAGATLVEFLVILGLITK*
Ga0101770_10242329	F090436	N/A	MKTQKNTQEVKSKVTFENFFLNTFANFEKISSDERKMLKNTNPNFISKSGSTYWYLNGYVYRHSSHFSRDTRTCAWFLEGKSVTNNVSGIYGKCKLEDFVQINTNAEIGKKYKIIYAPKDRKGVATINEGEGVLQKTTEFYYIFDTFKVHKWTLVTLIEK*