Scaffold Ga0101770_1020724

Overview

Basic Information

• Taxon OID: 3300006674
• Scaffold ID: Ga0101770_1020724
• Source Dataset Name: Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28198
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.11%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location

• Location Name: Fredrikstad, Norway
• Coordinates
  • Lat. (^o): 59.185359
  • Long. (^o): 10.970104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020881	Metagenome / Metatranscriptome	221	N
F022893	Metagenome / Metatranscriptome	212	N
F023320	Metagenome / Metatranscriptome	210	N
F030054	Metagenome / Metatranscriptome	186	Y
F031881	Metagenome / Metatranscriptome	181	Y
F033394	Metagenome / Metatranscriptome	177	N
F065696	Metagenome / Metatranscriptome	127	Y
F087074	Metagenome / Metatranscriptome	110	Y
F090436	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101770_102072419	F090436	N/A	MKTQKNTPEVKSKVTFEDFFESTFANFQKISKEEIKMLKNTQPNFISKSGSTYWYLNGYVYRHSSHFSRDTRTCAWFLEGKSVTNNVSGIYGKCKLEDFVQINTNAEIGKKYKIIYAPKDRKGVAFITEGEGVLQKTTEFYYIFDTFKVHKWTLVTLIEK*
Ga0101770_10207242	F087074	GAG	MIEGVYFCRKDGXVIGTPLPAFDDLFLQIDSDNTSAGLYFVVDFLNVDSNKKVTIKLYPKIGYTVVETYISQILKNLFNENFDYFTLNITVKEYDESGYVNNLIMSFIVIPSIYNSFLPPLKNYYFYYYNTSDFDKFSKIDNIIWYKDDYTYLVDSVPINTSLKNIYKKVGTVYEKLIRIHHKQVCEPLWKIQYLNLHTGYYDIFGGWYIKQDTVNVEKQIYNRQNLGDMGTRQALPELDNEFNLISYDLPIDQANYIAKSIIMSPKTFLIDTNGNEMECVVMNKNYTNALNVVNVFANINLNIKL*
Ga0101770_102072421	F065696	N/A	MKKVIYILLILFLISCSKQQXIKYLEQRYYSISHYYNDLDVKIYHICSKYQALHLYNDVKGTIIQEIGISNYHKTAKHRMSIVSHTNDIGTCQFQSATYDWLSTKYGINTNIIDPETSQITVMVLAFKDGRQNYWNGYKKYKNSIE*
Ga0101770_102072424	F030054	N/A	MNKREKKLFFVILILLAVIMFMSNSFRKKNDIIDFNNNLINRYKNDIKSYNIKIDSLNAVLLAKKNIDTVIITKYKQKIDSVYVYNYNDYVVFYDTLLNTNLANVDTFICFDSISVQKLTIKLVNCSLDSELLANCXIQNNLYXNIINIQDSVISLKDSVNASLEDMYKQKVKKLKRXRNTFAGATLVEFLVILGLITK*
Ga0101770_102072429	F020881	N/A	MTFEELFTVSEIKDISIMQKNINDDVIATLLQNVKEIEFLPLFKNNFFEDFLQRWTNGTQTTHDIQLKHYMLLYITKCIEYRAVTTLTYQIRASGIVSMNAENAVRVTDTERKTMLDQLNSDKEFHKHMMIKFINSNYSGFITTSRAFKNFDIL*
Ga0101770_10207243	F023320	GAGG	MKRYKALTFEVDLSGLGTEQWIQEELDYDEFAQKIIDTLIDVMREKDVEASSNLIQSLEPESKNGEIVIYADYYWKFIDKGVNGLRQSRDSEFSFKFVPASKKHALSIAKWLEXRGLATEFTTLXDAYXVATATKXKGIXGRKXVEXFEKEIDKIEIL*
Ga0101770_102072432	F031881	N/A	MKEFNFKVDRKISTMQIGKNKYKFAIDKSGATDINITQDKIEDVIYSIFDSSEFLDLVRIITNIKGKQKIPKIYLQGVQGAGNGLVDSTGCGFEDTTEMVLSDVDIEVTKKRMGLELCLDELVNMVLEVHISDGARNENLDINEALLAYFAQVLRKNIQEYAFADGTDGLLTKILTDGTAPTISATDPLEILLALYENLPSGWQTSNEANPVIFINSAMMTAIRGQIFSSTAPITSSIEIVNNRFNLPLTNAVVVASPHMPISGNKMRAVAGISNYLFLATDLESDFDDVRVWYSNDNETIRFSSQVYLGTAVADITSFVKYIEL*
Ga0101770_102072434	F033394	N/A	MKSIYIYFNNEIADIYYKDNSKNLHCTINLYTDSKNIREQFRKNLLQRYWDRLEINDIDDLKMIVKDSFVQIFTLQREKIDKND*
Ga0101770_10207245	F022893	GAGG	MKLKKAKKKLTISYKVKVKHFEDFLRLCSYDRADVDGFINLLSRCTEVDKDIFYNLKFADLIRFYKELIDSVDKEKDKAPKKAIKVDGRYYKLIDLLNLPVAFIIDFDLVEQTPSYLLALCYTETGSYTDERNTIVDEREKVMQNADIIDYMRLATFFLNWNNFLQKIKTKSKKNIVNLKR*