Scaffold Ga0075471_10019369

Overview

Basic Information

• Taxon OID: 3300006641
• Scaffold ID: Ga0075471_10019369
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4051
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018913	Metagenome / Metatranscriptome	232	Y
F024768	Metagenome / Metatranscriptome	204	Y
F043358	Metagenome / Metatranscriptome	156	Y
F074911	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075471_100193691	F074911	GGAGG	MILDEEVIKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGSYDMS
Ga0075471_100193694	F018913	GGAG	MTNQQRAEELLKVICKSEAHNTAWMLQEVLQQLRKQLSGNNVLDFYDEQGMMYNYGWDDCLKEIDGICDELELL*
Ga0075471_100193695	F043358	AGAAG	MKVYDYRIVEKLNVDTMKPYFIIQKYNLLTQEYNLHSNACIQTLEEAQEAIRLIRKYKEPIYHYVE*
Ga0075471_100193698	F024768	GGAG	MNYETEIINGHTAVVRHFFKPHEIKVGSRWIGSSGSIVVVEGINQYGSTGTWYEVVYSWEENGVKKTHDKDQFAFQCRYCLIVE*