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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006641 Open in IMG/M |
| Scaffold ID | Ga0075471_10013903 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4872 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (30.77%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F002038 | Metagenome / Metatranscriptome | 600 | Y |
| F003714 | Metagenome / Metatranscriptome | 472 | Y |
| F006659 | Metagenome / Metatranscriptome | 367 | Y |
| F105031 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075471_100139031 | F003714 | N/A | HPYTDHLTFAGRPIPLKRPMAVYAANRLQAILPQIAALNAAGKTQADAAAALGTTVCSLRKWIEITGTTWTNLKVRGPYNTKK* |
| Ga0075471_1001390310 | F002038 | N/A | MDRTHATPKGILTIAKTVPGQYALLLFLDGFPYVELTARKHADFLTELNAWKRKTYPSLARSDVRFFTLAPSGEIKELAFNR* |
| Ga0075471_100139033 | F105031 | N/A | MTIIRPHTKPRLWWLFPWSYARTLHNAANALRALTDRQDRALEMQAHIIVDQSEEISFLRQRVDDLNDAIVRGKAITPDAHPHE* |
| Ga0075471_100139034 | F000957 | N/A | MSSFKHLDGMVALLSEVYEINERVMCGDLVSAKAAIASTRMKKLLHHYHEALHEDGASKVSLQAYVAAGGWVGITYSYEVDGFEVAGSQVPRRV* |
| Ga0075471_100139037 | F006659 | N/A | MKKDPKLPADYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATIKAGEVTKAPQPTE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |