Scaffold Ga0075471_10010160

Overview

Basic Information

• Taxon OID: 3300006641
• Scaffold ID: Ga0075471_10010160
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5790
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021292	Metagenome	219	N
F036299	Metagenome	170	N
F043476	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075471_1001016013	F043476	AGGAGG	MLTLPTNIDKAEIEAFVNHVTAEVMDGHVDPLSVHIRCKAVVKALESIIERTEELAKDTAATYGKGEFKFHGASVQLREPRDMPDFNHDPVCVELADRLKARHELVKTAFKMADTAAIVDPNTGEVVPVVPVKPAKTTLTITFR*
Ga0075471_100101603	F036299	N/A	MLPRSTLIFSLLLFACCRKPAEVIRTSAVVHTDRQVVTAGSLTELTLPDLCDSAGIVRRFALRDSTKTSVLSVANSGTGIVIRLRRDTVVERLILRDTTIVERTVVVQPKKRKSRWPILLVGAILGLLASVVLFARLR*
Ga0075471_100101606	F021292	N/A	MNHDIITHTPITMDNGNIVKAYIHKLPSGMYAMHADYPFQPNSNSTRTRQIVDALFRSQHRDWFRFIRFQRSSTPLPMPKLNNQ*