Scaffold Ga0075471_10007678

Overview

Basic Information

• Taxon OID: 3300006641
• Scaffold ID: Ga0075471_10007678
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6767
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000860	Metagenome / Metatranscriptome	857	Y
F060855	Metagenome	132	Y
F074796	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075471_1000767817	F000860	N/A	MNPKILKNDSNYDEWCEQSIINAYKEAAECDEFLFGDYDFCKEWLGTND*
Ga0075471_100076788	F060855	GAG	MNKNKFNIFEFKFGKEKKPLEEWIKIGAIIHGSLDIISLIPGIEKRKVFNFIDELQLKMGTIDIINDYVIQDGELLKYRIDRVIDKSLEEFND*
Ga0075471_100076789	F074796	N/A	MPENLPGQPEDIINIASKAGYLKVSTDIGEIKLNSYNQVEIQPKGTVFGAKLKVEENGEVSPMITFDTKKLRDPKKDIDPKQMLDDALENFWNEQK*