Scaffold Ga0079301_1037959

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1037959
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1597
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Schwartzia → Schwartzia succinivorans → Schwartzia succinivorans DSM 10502 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F010618	Metagenome	301	N
F093841	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_10379592	F010618	AGGAG	MSIQELIAKLQELEKKYEQYSQDTEVVLAIHSKNEFNPEVSLDYIDEVLHPALDTHSGYLCRIVLCGEIEEED*
Ga0079301_10379593	F002406	N/A	MENLKWIRAMADRLRDELSKEYDDETKDLIIRAFMQGLFQHPSIVEELKSSSLIESDYFDED*
Ga0079301_10379594	F093841	N/A	MADGFYVYKMEDGYAVKDQFGYTLKTAKTVKTCENYVQLQLQTRRAAERYAIEKINQDKNKNRAI*