Scaffold Ga0079301_1008137

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1008137
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4035
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044453	Metagenome / Metatranscriptome	154	Y
F050331	Metagenome / Metatranscriptome	145	N
F091941	Metagenome / Metatranscriptome	107	N
F105052	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100813711	F091941	AGGAG	MTRIQFDMSRLKREFTRENLQAWAEFLAECNRANFYYKSDGWSQGELVDFDDTGFAEMELKWGNDHNDHEEYSDLVEYDREKFYHEFDRMKEKLMTNPEEIIG*
Ga0079301_100813712	F050331	AGGAG	MKKNSKKVADREAAIQWLCQKDFEFINEGDGAGLELLDSILADGFKGYGNYSDKELNEAIAERKEMERMYG*
Ga0079301_10081373	F044453	AGAAGG	MSKKIKLEFLLKTEAGEFLTRQQVIDRLCQYDVCMLMRNIHLEDYDWLSDTRERGFKGYRNYTDEELKEEWLESEAGWSNMMADGEQPYDIASTMGVK*
Ga0079301_10081378	F105052	AGGAG	MSHLDDKQQLIDIIKGEEKIYSQMIYTMGFQRLVKATSKEEAISKFQNDHIDIIADDENVDCDDHSEVVEMDMEVAELYGE*