Scaffold Ga0079301_1002699

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1002699
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7729
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022399	Metagenome	214	Y
F024101	Metagenome	207	Y
F033009	Metagenome / Metatranscriptome	178	Y
F042303	Metagenome	158	Y
F063633	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100269911	F024101	AGG	MSKEKPIHKMIDEVFGKELETELFDEIVEERNFIVNTLKTWIETDAIWEQMVNNKEERKQFLMHMQMLFLTELENSTLIELATTKHGDK*
Ga0079301_100269914	F033009	AGGAGG	MQNNSTQLWYAGTVTQFGDMQKIYDDETLWTLESKDGKWASVILDGVDVYNVRGEGAWNLARKVAESHMLKREQLQQEGWVTA*
Ga0079301_100269922	F042303	GAGG	MYIYSKRYRAIENTKSLLSDALYNTKYHVSNLVDTIKYTHDETWLAIVLVSTWVFCAVFATWSY*
Ga0079301_10026993	F022399	AGGTGG	MDKKYKSIYSKNGLEVFVNPEDFWVDYKVRLNGYHAKTFYGETAWMDVTRFVHDQAMEFWDFNLDEINDRLTNDIVKEIERRFSDAGM*
Ga0079301_10026999	F063633	N/A	MSNTYKDRKVQHVQGLRRSSASGTHKNKVRDRQKRLSSATIWKDYLKDKDE*