Basic Information | |
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Taxon OID | 3300006639 Open in IMG/M |
Scaffold ID | Ga0079301_1002699 Open in IMG/M |
Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7729 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (91.30%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F022399 | Metagenome | 214 | Y |
F024101 | Metagenome | 207 | Y |
F033009 | Metagenome / Metatranscriptome | 178 | Y |
F042303 | Metagenome | 158 | Y |
F063633 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079301_100269911 | F024101 | AGG | MSKEKPIHKMIDEVFGKELETELFDEIVEERNFIVNTLKTWIETDAIWEQMVNNKEERKQFLMHMQMLFLTELENSTLIELATTKHGDK* |
Ga0079301_100269914 | F033009 | AGGAGG | MQNNSTQLWYAGTVTQFGDMQKIYDDETLWTLESKDGKWASVILDGVDVYNVRGEGAWNLARKVAESHMLKREQLQQEGWVTA* |
Ga0079301_100269922 | F042303 | GAGG | MYIYSKRYRAIENTKSLLSDALYNTKYHVSNLVDTIKYTHDETWLAIVLVSTWVFCAVFATWSY* |
Ga0079301_10026993 | F022399 | AGGTGG | MDKKYKSIYSKNGLEVFVNPEDFWVDYKVRLNGYHAKTFYGETAWMDVTRFVHDQAMEFWDFNLDEINDRLTNDIVKEIERRFSDAGM* |
Ga0079301_10026999 | F063633 | N/A | MSNTYKDRKVQHVQGLRRSSASGTHKNKVRDRQKRLSSATIWKDYLKDKDE* |
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