Scaffold Ga0079301_1002140

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1002140
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8820
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002357	Metagenome / Metatranscriptome	567	Y
F003825	Metagenome / Metatranscriptome	466	Y
F045061	Metagenome / Metatranscriptome	153	Y
F088792	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100214012	F045061	N/A	MAITSKEINLSQLDKELGSKGLCGDFNDPKKKIIVQADNSTVTDAELDAAIKAHVAGPTQDQIVKLNREQGLAKLKELGFTDDQISALLG*
Ga0079301_100214014	F000468	N/A	MTVFTPDWKLTVGGVDYTDIAISDVQHQSGRESIYTQALPSYMQITLLALNNQTLPFDINDSFDLQVKDSTGSYVSLFGGDITDVTVEVGNTGSIDTVIRYTIIAMGSLAKLTKEIWDDNISQDEDGDQIYGILSSVLLGTWNDVPAASQWSTYNATETWDNAVNLGLGDIDQPGLYTMTAQSQTVDTIYNVVSDIANSAFGYIFEANNGDIGYADADHRQNYLLTNGYVELDAGHALGAGLSTVMRSSDVRNDIYINYGNNYNSQVTASDATSIATYGYKAETINSRVQGAVDAQAIADRYIDQRAYPQPAFQSITFPITNAEIDNADRDDLLGVFMGMPVDIRNLPTQISGGTFQGYVEGWRWSTRFNELFLTINVSPVAFSQVAMRWNTTPITEAWNTIDPSLTWEYATIVA*
Ga0079301_10021403	F003825	AGGGGG	VGYIAFINGSGFTIELDDDGAHIVKSVITCEMCGDDRVFKNGTCFVCSELIKHD*
Ga0079301_10021404	F002357	AGGA	MGFNLDDYEDVATLNKWFIENYPMGRSDISVISHDPKEGYILVQATLWRDSKDDKPAVSNIAFGSRETYMPNMKKWYAEDTASSSLGRAIILLKGSNKTATKDSMKIVEADQKQNEYEKKLEQRRYGAPGSKSAAVEDALRASFAVENKQDDPQQWSLSEAVDAIGKSTPNPPPECEHGMILKQGVSKGGKPYYGYVCKGSNKEHAIWAKMTAKGSWYFEGVQ*
Ga0079301_10021406	F088792	AGG	LILGSEMEIVGYGFIIGCLIGAALYFWDEHRKSEIYDNGYYAGRAAGWKSCIDHQAKIQKLKLEQVFDYDKN*