Scaffold Ga0079301_1001833

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1001833
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9621
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (57.14%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002052	Metagenome / Metatranscriptome	599	Y
F009397	Metagenome / Metatranscriptome	318	Y
F009599	Metagenome / Metatranscriptome	315	Y
F016962	Metagenome / Metatranscriptome	243	Y
F021758	Metagenome / Metatranscriptome	217	Y
F023573	Metagenome	209	Y
F047018	Metagenome / Metatranscriptome	150	Y
F054814	Metagenome / Metatranscriptome	139	Y
F068769	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100183311	F009599	AGG	MINIQGLSKQDVQICKLLWNCDTLEAVDAMVAAMPPAYKQRAVVMRELMTAAQLDQVEDINEHIPALLQRISAG*
Ga0079301_100183317	F047018	AGGAG	MLKLIGIAVVVYLGWITGVIQATLMITAGVLIAVAGA*
Ga0079301_10018332	F009397	AGGA	MGMDFLHGTSTAFDINICMSEQYLLPMARNSITGQTVKNQDLTGNVFTQKQRVLAEQVADQLAHRMTARTGDAWLGFVRLYTPTERR*
Ga0079301_100183320	F054814	AGGAG	MAEVKLNGVYKVTVTEYDCGAQRIDPNDTRFYTTLEEAKAYKAHWETGGSRECYWRAEIEQIG*
Ga0079301_100183324	F016962	N/A	MDMIELILAALVGILIGWSASKKVHLDGFRQLLKALKITEDDLLRAMIKIQSREWQLDDQEGSTDETIVDVKLEQQGTEIFAYRKSDDMFLAQGSNADSLIERLNQNLTPCRVVVAQEDGADLLQKNNT*
Ga0079301_100183326	F002052	AGGA	VREYQFVFNVVCASEGRPNMARVEEMIDLNMQDLVFDDEFIAALDEKQSVTIQVNLVK*
Ga0079301_100183327	F021758	N/A	MKVIKLDRRYSGHGTWTHRTNGGAWYGDDARDRGLVAFYDMRCYMTQMNGPGCFIHEAWALKKAGRTVPEWAWDTDGNVFFRDSALVNFSLAKDRWL*
Ga0079301_10018335	F068769	N/A	MKIFLILVLVFTAALAHAETRTLNKPVVCDTTEKVFRTMMEEFGETPQWRGATPEQGTSTMLTVNPRTGAWTLIEYTPIMACVIGVGESSSSAWGTPA*
Ga0079301_10018337	F023573	N/A	MLTVIDSTGEYHCTVTIAGPVGVIRIYDLVWCPLDRQDLLEIYYWESYTVLEGGYHCCFSIPGKVELLSSLHPRQ*