Scaffold Ga0079301_1001134

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1001134
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12545
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F018703	Metagenome	233	Y
F065721	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100113411	F011756	GGAG	MSEPRYLFGDDYAYNGGYEELINCLVCSKEYDRVEYRSDTCSDCEDKIIKRQKESK*
Ga0079301_100113413	F018703	GGAG	METIERRIEGAKAQAVRQRNYRRARDRALARLSRDYPNVYRTYLEEEMNVDEDMGKKWLDIAGNTKPRNFRRG*
Ga0079301_10011345	F065721	AGGAG	MTKYIANENGDWWEVVEGEGLYLIDTELENIANKMEEEDTNPYQDKFERFIWRYGTEVKLNLTNVEGIRV*
Ga0079301_10011348	F006842	AGAAGG	MKSTPAICGDHLVPISECDCVNYLQELKTSAERLVQLTKEREELSK*