Scaffold Ga0075522

Basic Information
Taxon OID	3300006638 Open in IMG/M
Scaffold ID	Ga0075522_10018278 Open in IMG/M
Source Dataset Name	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4456
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4456

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	USA: Barrow Environmental Observatory site, Alaska
Coordinates	Lat. (^o)	71.299	Long. (^o)	-156.61	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Barrow Environmental Observatory site, Alaska

Coordinates

Lat. (^o)

71.299

Long. (^o)

-156.61

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009138	Metagenome / Metatranscriptome	322	N
F013515	Metagenome / Metatranscriptome	270	N
F016695	Metagenome / Metatranscriptome	245	Y
F035282	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075522_100182783	F035282	GGAG	MKIVVLLPFILLVRVIAHFDPHLFRYWAVHSMDYWRFWGTTWEGYAIGLAGWAILLGGLYSLVVWLW*
Ga0075522_100182785	F016695	N/A	MHYNQIIAVLQEHGFAEGRLIANSKSGYCKRHRSHFVVFNAQVCNIHGRLLKQADLDLTLDGEKLTQAARAAGENFYVLYENDPSPFWKPGSMPMPRVLRDAVWWTRIHREDEDLFLPMNSGPLKRKRVRLRCSLGRWQNRPAYSVDLWDNPAWGSGRNLSGAVVQVLGHPPRGLRPTKKDEVFTAETSKGRGRPVRPVFYHRVGLLDYVWFSHGAAVPAILYDHIVRPLDSARFTRHRDSSAIHLRQAGEVVGLFWPCHISAPEVLADARRRLFGRFAKSTEAVENPRCVVDEMPTGEAMMRFHKPKSGRVKKPPGKVVSRRAPKGRSVAVTAVEQSSGIGKEL*
Ga0075522_100182786	F013515	N/A	MNKQTRKTKLPEDGFMTAPGYPFSARDIFGDLRSRLAAEHRHAMSFERLAKMLGRSKSTTYNWFDIFHHPHVLGFLCLLERLPPAERQSFIEAHCRAYPTLDDPRVAHAPGKTAKLLELLNQEAGLTIITGGTDFSRTFVFTALAHAASPADGRLPAAAGIDLHRSNLFVPVESLIYIDGDLGPDHVRRLTHRIWPRVLTSGAPRLFFNRVWSCVPEVREDLLRCAGFKHVVIAEEGVSDMGDLKTRVSTPIHVLTISTAKSVPERILVNCRRVKGAKRPGN*
Ga0075522_100182787	F009138	N/A	MPEFMPKNRIFERPDCRRRSLKASLTNVTKTARQWDAVFALRVHPELLGRYTVPNVADDDEGYYLVGALVQEIDAALEGRIPSRLVSYGKFLAIDFAFLAQRRRTSSEEVLNLRAVLGPCDGSHPVVCVARQDPPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075522_10018278

Overview

Ecosystem & Geography

Associated Families

Sequences