Scaffold Ga0075461_10019490

Overview

Basic Information

• Taxon OID: 3300006637
• Scaffold ID: Ga0075461_10019490
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2240
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005264	Metagenome	406	Y
F027836	Metagenome	193	N
F038218	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075461_100194901	F005264	GAGG	MTMRRWWNVLAALAVLAGGADAEILMMSHDFTEFQHPFWATESDGKGDLIQWDLTDKCGGGSVWLNADGFFNNHMDRQYTAHGYRYGIKRIPGAPVDDVSDFITNDWIQHHRNGAVEFGGNDS
Ga0075461_100194905	F038218	AGG	MNTELLNAIQNMLINFANENAISLADEFGTREKFAQFVFSFTIKSLVDICGLDTKTAYDFVMGDGAFAKLAGECWQQLNSVAA*
Ga0075461_100194907	F027836	N/A	MENCKACGNPLEDWEELSTTCEGCEQMAQTKQLPGDLWTIGTALADAVGIARTTLISAADRAAFPIVVLGCGSRAALRADVAAWVAGARGGE*