Scaffold Ga0075461_10010465

Overview

Basic Information

• Taxon OID: 3300006637
• Scaffold ID: Ga0075461_10010465
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3064
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042880	Metagenome	157	Y
F052570	Metagenome / Metatranscriptome	142	N
F078660	Metagenome	116	N
F079999	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075461_100104652	F078660	AGGAGG	MKLVNFYEVMDHKGEVEWGGASVSEAITWFRRGLDRSILVSVWDEQSEDDFKLITDKIDITAIVLATITSEREKA*
Ga0075461_100104656	F052570	GGAGG	MRKMKYKLPKGVELEILDYDAERKDRQDSAFYTWGDTNDVALLTYQGREYRVVCVGEMRILYKGEIIRYCDDLIRAGIKRDKDLSKIDDSGGEWINNSWFEVYDYGSGEYTGEVYHEVKDAIETVANWIIDEELVNV*
Ga0075461_100104657	F042880	GAGG	MASYTTIGELIERLKGEDLNAPIIYQYYLAEHFEISEEVFGQVAGDFDSLIPCSDSYEAISREIDSKREEVNA*
Ga0075461_100104658	F079999	AGGAGG	VRDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGDNG*