Basic Information | |
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Taxon OID | 3300006637 Open in IMG/M |
Scaffold ID | Ga0075461_10000839 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9168 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018535 | Metagenome / Metatranscriptome | 234 | Y |
F028501 | Metagenome / Metatranscriptome | 191 | Y |
F041172 | Metagenome | 160 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075461_1000083910 | F041172 | GAGG | MAKLKTALLRAQETAGFIGSNESLLWKAREVLSKALDDPEPFEGLASAETALHLINTYLMETELCKR* |
Ga0075461_1000083912 | F018535 | GGAGG | MKTHTDISGPHWPQHLWPYTYTHGDTELLCFVDWEPADRSVGWSGGAWLIHAYAGGVDVVELLKDQVIKDIEQAAAEALQEGPTC* |
Ga0075461_100008399 | F028501 | GGAGG | MRTITAKYTGICAATGARILAGDLIQWSKGRTVLLERRRTAVDTITLYGENGPQTYYQNARGRCIDAPCCGCCTI* |
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