NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101569_10007126

Scaffold Ga0101569_10007126


Overview

Basic Information
Taxon OID3300006625 Open in IMG/M
Scaffold IDGa0101569_10007126 Open in IMG/M
Source Dataset NameSoil microbial communities from the Leymus chinensis steppe, China - after adding 10.5 g N m- 2, yr-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChengdu Institute of Biology, Chinese Academy of Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)565
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Source Dataset Sampling Location
Location Namethe Inner Mongolia Grassland Ecosystem Research Station
CoordinatesLat. (o)43.63Long. (o)116.7Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006715Metagenome366Y
F026116Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0101569_100071261F006715AGGAGMRRLLLLALIATLASLSINAQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLTTENFQVLDDGKPRDISYFTREGQARKPLALILILDLREDGAGRFLKRPEILKAM
Ga0101569_100071262F026116N/ALNVTWMPLVQTLSATDDEQVYIFLKEAGDKFNVLVITIDQRDATVVQVTLSPKNLALLLKDPEGTGKAITQEATINDQE*

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