Scaffold Ga0101441_123024

Overview

Basic Information

• Taxon OID: 3300006621
• Scaffold ID: Ga0101441_123024
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ07 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2743
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F002151	Metagenome / Metatranscriptome	589	Y
F006008	Metagenome / Metatranscriptome	384	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101441_1230243	F002151	N/A	MEYVIYTALACSIAAFALSVIAGARVGKFERATADTDWETLANLTGDIAALKRTAQTLNNRLNGMNKAVVPQDQIIQQMIEHQNVEQIRRGG*
Ga0101441_1230245	F000754	N/A	NNAEFARNASVSALVTGEPFGASENSSYTLNNMVTTGAIRNRPIITFTNTTAATRTIDVAVFIGN*
Ga0101441_1230246	F006008	AGGAG	MPIVKKRIFLAAGATSDQVLSGTTYEYVDPNTVIRVAAAVDT