Scaffold Ga0101441_112488

Overview

Basic Information

• Taxon OID: 3300006621
• Scaffold ID: Ga0101441_112488
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ07 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30605
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (45.24%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004164	Metagenome / Metatranscriptome	450	Y
F073500	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101441_11248825	F073500	AGGCGG	MMNWIKIIAALTMFGFFSNANALGYCDSSGASEDDDGVITFTGLEAEIGECAFAPDEYTIKIYKMALCTTSPTRPTAEDAYDVSSCVDVINSPDGQDVNLAAGSEVTLSGVTRPANGTYNFGYILMANTFAIKAKKQFANTMHTFTGGASGNYCWTKSSAAKTSDSDGIEWEPTSPLAECGGASGTAGTYVETLDQFDVGEFTAGPISVTGGTLSADLITDADGLLVIGPDSADRLFGVQTFSSPVVVTSDSSVFTVSFGVNQASSLWMTDQGSIDEYEVYAIGSGPFSTFMTVD*
Ga0101441_11248838	F004164	AGGA	MAFLHKFLTLFFLLLMPVFLHASEDLKYNYEHDSLGDKFDASGDVTFRFYDDKSIIYEYAHVNINWKGGFFKSSITDDFINKRSIKNGLVLYDIVEGNQKKGYSVFARHIDVKNYPVGFETKKIIKDEPRHPEFSDYDWIFKFKVESVESLKINGRSYKTIFTKLWGSRPTSTTNCKMAQPGVNFSNSIGEIYVETWFDLKNSKLLKQVFTKYGCVPSKRLVSKETWSLAN*