Scaffold Ga0100228_1050071

Overview

Basic Information

• Taxon OID: 3300006565
• Scaffold ID: Ga0100228_1050071
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1771
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014898	Metagenome	259	Y
F019133	Metagenome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100228_10500712	F014898	N/A	MFNDKWFITLLFFVLLGLGLSGCNTVCPDKTTVEVGVTESDSKNDKLQEKKSITQTWKWGKKKCNEER*
Ga0100228_10500715	F019133	N/A	MIDEDRTYENEVRLNNDRLGVKKNREDNKGNIPLDLASSNAPKIQKEKVNGVCSDDNHVCVCGR*