Scaffold Ga0100228_1028764

Overview

Basic Information

• Taxon OID: 3300006565
• Scaffold ID: Ga0100228_1028764
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3383
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019151	Metagenome	231	Y
F053336	Metagenome	141	Y
F054095	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0100228_10287644	F054095	GGAG	MIPQWKMNGKDMRFDGSIEIGVVEVRDLFNDLVVTLWVDQEESGSIAVKTLGGIGNGRYDEQILSREKPVEEGEEWKS*
Ga0100228_10287646	F053336	GGAGG	MQEYFEYLTDLRDNGSMNMMWAPTMLQANFDLSVKESREVFSKWCESLKGN*
Ga0100228_10287647	F019151	AGGA	MITANERALDGLELFEVNGEQSFEMTNDTLKICADDDGTIWRSVRGLDVLDADGNCVFSLSWSESGVCGTLHNEDFKVKITEEF*