Scaffold Ga0101389_1000412

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101389_1000412

Scaffold Ga0101389_1000412

Overview

Basic Information
Taxon OID	3300006561 Open in IMG/M
Scaffold ID	Ga0101389_1000412 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Black Sea in Odessa region - Od_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Hellenic Centre for Marine Research (HCMR)
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	1356
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Investigation Of Black Sea Water Bacterial Metagenome

Source Dataset Sampling Location
Location Name	Vapnyarka, Odessa Oblast, Ukraine
Coordinates	Lat. (^o)	46.35116	Long. (^o)	30.5519	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101123	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101389_10004123	F101123	GGAGG	MNLQIIDALWNKMLVTYGSEWTRKFDGMPLDEVKGAWADDLRGFTVEQIKYGLSMLGERPPNLIQFKDLCKKAPQYFDSLQLSYRPTPSEEKLAKFRRAYAD*

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