Scaffold Ga0070744_10145337

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10145337
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 681
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029433	Metagenome	188	Y
F042891	Metagenome / Metatranscriptome	157	Y
F048984	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_101453371	F042891	AGGAG	MATTVYLSNPTVTINSVDLQDQCTSATINYVYEQLETTAFGDTARKFGGSAVTSLQNN
Ga0070744_101453372	F029433	GAG	MDYEVTSNRLNGHTRGDIIREADLGDLTTDLLFLVEAGHLSPLKIKKSAKTIDIDPQE*
Ga0070744_101453373	F048984	N/A	NNLATTLNAVSGLVCITDTRNVQAPCILLDAMSFTAFNANIVDISIPVTVISLGPSNADAYRNALNVAAKVLAAKVAVTDGRPTTLTIGGVDYPALSLNIQMKASTT*